
Don't call it an answer, more of a response. In your html file that is referencing the .js functions/scripts change them to absolute references that reference the entire location of the the .js file vs. a local reference.
So for example use src= "
http://www.yourdomain.com/yourfolder/yourfolder/file.js" instead of using src= "/yourfolder/yourfolder/file.js"
Remember, I'm not saying this will work, but its what I would try.